Bacteria-based proteomics

Proteome analysis


Bacteria is a meaningful area of proteomic research as understanding the microbial world is essential for many industries. From the study of pathogenic bacteria, resistance to an antibiotic or bacterial biofilm, proteomics provides a vital insight into the driving mechanisms and helps us explore phenotyping beyond the aspects of genomics.

If you’d like to learn more, we are happy to discuss your project and help you get the most out of your bacteria-based proteomics analysis.


Let’s discuss your project

Guiding you from sample to biology

Our experts are ready to help you with your bacteria-based proteomics project. Ideally, we set up an online meeting where we get to learn about your project. Here, we discuss the different options to reach your aim.



Get a price estimate within 24 hours

If you need an estimate for your project, we are happy to help. We encourage you to request an initial free consultation to assess which approach fits your bacterial research aim.



By booking a meeting, you agree to our privacy policy.

Sample preparation and Mass Spectrometry

Discover the opportunities with bacteria-based proteomics

Bacteria-based proteomics offers various approaches to answer different aims; we offer a free meeting to discuss your goals and what services match your project. We often provide you with more than one approach, providing different sensitivity levels, timescales, budgets, and outputs options.



Experienced professionals

Biogenity’s team and its partners works with the highest standards to ensure the best quality handling and analysis of your samples. We collaborate with carefully selected laboratories for bacteria-based proteomics, ensuring that every aspect of the workflow is executed by specialized personnel.

The latest equipment from Thermo Fisher Scientific

We pride ourselves on being able to offer the latest equipment on the market. Our collaborating proteomics laboratory has the latest equipment from Thermo Fisher Scientific, ensuring a deep coverage. If you’d like to see the complete platform list, follow this link.




The right instrument for the research aim

The various research aims can result in various challenges. Having different instruments allows for tailoring the instrument's use to your need. Whether you are looking for high sensitivity and accuracy to detect small changes in low abundant proteins or looking for budget-friendly methods for less complex samples, we have you covered.

Data analysis, including report, figures, and tables

Visualization of your bacterial proteome analysis

Data analysis is where you get the overview of your bacteria analysis. You will receive an easy-to-follow report describing the data analysis and results hereof, step-by-step, together with a folder containing all tables and figures. To ensure that you have the material needed, we always provide a vast number of figures and tables.



Let us be your data scientist

Biogenity’s data analysis is much more than simply a data analysis. It offers an insight into what biology is, e.g., potentially activated or deactivated in the different conditions, without the hassle of postprocessing the data. Our team does it all: data filtration, outlier testing, variance plotting with PCA, clustering, and the statistics - and that is just with the statistical data analysis.


Download DEMO

Bioinformatical data analysis of your bacterial proteomes

Bioinformatics allows for much deeper data analysis of your bacteria-based proteins to identify pathways, biological processes, molecular functions, cellular components, and kinases that are changing in your data. The bioinformatic data analysis includes enrichment analysis, comparative figures, and network mapping.

The databases available for bioinformatics on bacteria are vastly various in quality. We always evaluate the proteome database for your specific bacteria and discuss the database with you if we see any concerns. We can also use your FASTA file if you have results from genomic or transcriptomic studies.



Interactive plots to highlight signaling pathways

With our bioinformatic data analysis, you will also get interactive plots that allow you to explore the signaling pathways that are enriched in your data. It lets you take the regulated proteins into perspective, showing which biological pathways or biological processes are potentially up or down-regulated. This helps you get a good understanding of what is happening in the different conditions.

Delivery and discussion

Delivered directly to your inbox

When your fungi analysis is ready, we deliver it directly to your inbox. Your data and reports are easy to access and secured with encryption and password protection.

You can receive your sample leftovers sent by courier, or Biogenity can safely destroy them after project completion. It is entirely up to you.



Plant a tree with Biogenity and One Tree Planted

Partnering with One Tree Planted, we want to work towards a brighter future with better treatment for diseases and a healthy planet to enjoy life. For us, our children, grandchildren, and the generations to come.

Biogenity donates a dozen trees for every project delivered to support local communities, reforestation in the Amazon rainforest, and reduce CO2 emissions. See how we are making a difference together.

Post-consultation and discussion

It is important to us that you get the most out of your experiment, which is why we always offer a post-consultation where you can ask all your questions about the results. Together, we ensure that you have the best prerequisite for your further research. The consultation can also be used to explore the next step, whether you are looking to expand the project with additional omics studies or validate the results.

What you can expect:

  • Explanation of the different steps in the sample analysis
  • Discussion of the data
  • Explanation of the different steps in the data analysis
  • Q&A to the report

Other proteomics LC-MS/MS approaches

Immunopeptidomics

Proteomics

Are you investigating epitopes? Biogenity's immunopeptidomics workflows aim to identify the peptides bound on Major Histocompatibility Complexes (MHC).

Learn more
Discovery-based proteomics

Proteomics

Biogenity offers global protein analysis of your samples, getting deep proteome coverages with state-of-the-art accuracy.

Learn more
Phosphoproteomics

Proteomics

Biogenity can provide you with deep coverage and an easy-to-follow report if you are interested in kinase activity and phosphorylation patterns.

Learn more
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