Fermentation Proteome Analysis

Precision Proteomics Services


At Biogenity, we apply proteomics to fermentation systems to reveal biological mechanisms, optimize production parameters, and support innovation in alternative protein development.

Fermentation is a widely used technique using enzymes and microorganisms to change a substrate into the desired product. Fermentation for alternative proteins is an industry in rapid growth. Various fermentation methods are used in the food industry, e.g., traditional fermentation in cheese production, biomass fermentation for mycelium-based steak, and precision fermentation for vegan dairy products. Proteomics can provide various insights into the fermentation process, from investigating the biological mechanism to estimating parameters for the process.

If you’d like to learn more, we are happy to discuss your project and help you get the most out of your fermentation proteomics analysis.


Let’s discuss your project


Targeted and discovery
options for fermentation products


3 Thermo Fisher platforms
Exactive Classic, Exploris 480, Eclipse


Tailored workflows
from protein extraction to data analysis

Guiding you from sample to biology

At Biogenity, we understand that fermentation proteomics research is a sophisticated field that demands precision, expertise, and a tailored approach. Our team of proteomics experts is dedicated to guiding you through every step of your study, ensuring your project not only succeeds but also contributes to your scientific venture.



Get a free consultation

We invite you to an online consultation, during which we can address your questions and offer an expert assessment of how our fermentation proteomics strategies can be customized to meet your research goals.


Sample preparation and sample analysis

Fermentation samples of various forms and content

Mass spectrometry offers many different opportunities to investigate different areas of the fermentation process. Our experts will tailor your workflow, as we most often experience that the methods are vastly different. At Biogenity, we will work with you to narrow down which methods are relevant for your research questions and discuss the potential results, ensuring the analysis is tailored to answer the right questions.

At Biogenity, we assist in finding the best protein extraction method or conducting the complete extraction for you. If you are trying to investigate different fermentation processes, map a fermentation process or analyze the product, your samples can be of various forms and content. We are transparent in our expectations for the result and risk assessment, allowing you to choose the best strategy for your fermented samples.

The right approach and instrument for the task

At Biogenity, we offer targeted and discovery-based options for mass spectrometry of fermentation products. We can help investigate a target product, measure the concentration, or discover and map the fermentation process. With instruments from Thermo Fisher Scientific, including the robust Exactive Classic, the most recent Orbitrap Exploris 480, and the Orbitrap Eclipse Tribrid, Biogenity can ensure you the right instrument for your fermentation analysis.

Data analysis, including report, figures, and tables

Bioinformatics of your fermentation analysis

Data analysis is where you get your overview. You will receive an easy-to-follow report describing the data analysis of your fermented proteomics samples and results hereof, step-by-step, together with a folder containing all tables and figures. To ensure that you have the material needed, we always provide a vast number of figures and tables.



Data analysis to display the area of interest

Biogenity will tailor your data analysis, whether the focus is biological process mapping, process optimization, concentration calculations, or comparison of different fermentation methods. Our data analysis will get you the results you need to evaluate your fermentation.

Delivery and discussion

Delivery, post-consultation and discussion

At the conclusion of your fermentation proteomics analysis, we ensure a seamless transition from discovery to application. We deliver detailed reports and data, followed by a post-delivery consultation to discuss your study's insights and findings.


What to expect during post-consultation:

  • Explanation of the different steps in the sample analysis
  • Discussion of the data
  • Explanation of the different steps in the data analysis
  • Q&A to the report(s)

Together, we ensure that you have the best prerequisite for your further research. The consultation can also be used to explore the next step, whether you are looking to expand the project with additional omics studies or validate the results.


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