Metaproteomics

Unlock biological insight with metaproteomics


Metaproteomics reveals the functional activity of complex biological systems by identifying and quantifying proteins across mixed microbial communities and host–microbiome samples. It enables direct insight into how biological communities and their function change in response to environmental conditions, treatments, or system dynamics.

Applications include human microbiomes, bioreactors, soil ecosystems, and fermented cultures. If you’d like to learn more, we are happy to discuss your project and help you get the most out of your metaproteomics analysis.


Let’s discuss your project

Guiding you from sample to biology

Our experts are ready to help you with your metaproteomics research. Ideally, we set up an online meeting where we get to learn about your project. Here, we discuss the different options to reach your aim.



Get a price estimate within 24 hours

If you need an estimate for your project, we are happy to help. We encourage you to request an initial free consultation to assess which proteomics approach fits your research aim.


Sample preparation and sample analysis

Customized sample preparation for metaproteomics

Biogenity’s team is experienced in working with different approaches for metaproteomics, and we always offer a free consultation to discuss which workflows fit your research aim. At Biogenity, we care, which is why it is essential for us to understand your study to ensure that we provide you with the best approach for your research.



Broad sample type coverage

We support various sample types, including:

  • Environmental microbiomes (soil, water, sediment)
  • Host-associated microbiomes (gut, skin, oral, respiratory)
  • Fermentation and bioprocess samples
  • Complex clinical specimens

Our sample preparation workflows are optimized to maximize protein recovery while minimizing bias, ensuring consistent and representative coverage across diverse proteomes.

Advanced instrumentation and expert execution

Using state-of-the-art mass spectrometry platforms and optimized liquid chromatography setups, we generate deep proteomic coverage and high-quality data for your metaproteomics study. If you’d like to see the complete platform list, follow this link.



Expert execution you can trust

Our experienced team and trusted laboratory partners ensure:

  • High-resolution peptide identification
  • Accurate quantitation across samples
  • Robust reproducibility and transparency

Data analysis and biological interpretation

An integrated part of your metaproteomics workflow

At Biogenity, data analysis is an integrated part of our metaproteomics workflow. We process and analyze your data so you can focus on interpreting the biological meaning of your results. Our team combines expertise in bioinformatics, statistics, and machine learning to handle complex metaproteomic datasets, from quality control and outlier detection to advanced modeling and pattern discovery.



Clear visualization and actionable results

We deliver results in a format that supports both interpretation and communication. This includes publication-ready figures, structured data tables, and clear reporting that links analytical outputs directly to your biological questions. Beyond identifying regulated proteins, we place findings in a functional and biological context, helping you understand how microbial communities and host systems respond to conditions or interventions. All analyses can be tailored to your study design and research objectives, ensuring the outputs align with your specific goals.


Download DEMO

Delivery and discussion

Delivered directly to your inbox

When your metaproteomics analysis is ready, we deliver it directly to your inbox. Your data and reports are easy to access and secured with encryption and password protection.

You can receive your sample leftovers sent by courier, or Biogenity can safely destroy them after project completion. It is entirely up to you.



Plant a tree with Biogenity and One Tree Planted

Partnering with One Tree Planted, we want to work towards a brighter future with better treatment for diseases and a healthy planet to enjoy life. For us, our children, grandchildren, and the generations to come.

Biogenity donates a dozen trees for every project delivered to support local communities, reforestation in the Amazon rainforest, and reduce CO2 emissions. See how we are making a difference together.

Post-consultation and discussion

It is important to us that you get the most out of your metaproteomics experiment, which is why we always offer a post-consultation where you can ask all your questions about the results. Together, we ensure that you have the best prerequisite for your further research. The consultation can also be used to explore the next step, whether you are looking to expand the project with additional omics studies or validate the results.

What you can expect:

  • Explanation of the different steps in the sample analysis
  • Discussion of the data
  • Explanation of the different steps in the data analysis
  • Q&A to the report

Other proteomics LC-MS/MS approaches

Discovery-based proteomics

Proteomics

Biogenity offers global protein analysis of your samples, getting deep proteome coverages with state-of-the-art accuracy.

Discovery-based proteomics
Bacteria-based proteomics

Proteomics

Biogenity offers global protein analysis of bacterial samples, providing insight into pathogenicity, resistance, and biofilm formation.

Bacteria-based proteomics
Fermentation

Proteomics

If you want to improve or understand bioactive molecule production from the fermentation, Biogenity offers proteome analysis for your fermentation products.

Fermentation
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