Metaproteomics Analysis

Unlock Biological Insight with Metaproteomics


At Biogenity, we use metaproteomics to reveal the functional activity of complex biological systems, identifying and quantifying proteins across mixed microbial communities and host–microbiome samples.

Metaproteomics enables direct insight into how biological communities and their function change in response to environmental conditions, treatments, or system dynamics. Applications include human microbiomes, bioreactors, soil ecosystems, and fermented cultures.

If you’d like to learn more, we are happy to discuss your project and help you get the most out of your metaproteomics analysis.


Let’s discuss your project


Mixed communities
and host–microbiome samples


Soil to clinical samples
gut, bioreactor, fermentation


Functional context
pathways and community response

Guiding you from sample to biology

At Biogenity, we understand that metaproteomics research is a sophisticated field that demands precision, expertise, and a tailored approach. Our team of proteomics experts is dedicated to guiding you through every step of your study, ensuring your project not only succeeds but also contributes to your scientific venture.



Get a free consultation

We invite you to an online consultation, during which we can address your questions and offer an expert assessment of how our metaproteomics strategies can be customized to meet your research goals.


Sample preparation and sample analysis

Customized sample preparation for metaproteomics

Our proteomics laboratory specializes in handling complex microbial and host–microbiome specimens, from sample preparation to LC-MS/MS, with high quality. It ensures a robust and reproducible result, which is essential for future follow-up studies.

We support various sample types, including environmental microbiomes (soil, water, sediment), host-associated microbiomes (gut, skin, oral, respiratory), fermentation and bioprocess samples, and complex clinical specimens. Our workflows are optimized to maximize protein recovery while minimizing bias, ensuring consistent and representative coverage across diverse proteomes.

Advanced instrumentation and expert execution

Using state-of-the-art mass spectrometry platforms and optimized liquid chromatography setups, we generate deep proteomic coverage and high-quality data for your metaproteomics study. Our experienced team and trusted laboratory partners ensure high-resolution peptide identification, accurate quantitation across samples, and robust reproducibility and transparency.

We are happy to guide you around the various instrumentation options to find the best fit for your metaproteomics study.

Data analysis and biological interpretation

An integrated part of your metaproteomics workflow

At Biogenity, data analysis is an integrated part of our metaproteomics workflow. We process and analyze your data so you can focus on interpreting the biological meaning of your results. Our team combines expertise in bioinformatics, statistics, and machine learning to handle complex metaproteomic datasets, from quality control and outlier detection to advanced modeling and pattern discovery.



Clear visualization and actionable results

We deliver results in a format that supports both interpretation and communication. This includes publication-ready figures, structured data tables, and clear reporting that links analytical outputs directly to your biological questions.

Beyond identifying regulated proteins, we place findings in a functional and biological context, helping you understand how microbial communities and host systems respond to conditions or interventions. All analyses can be tailored to your study design and research objectives.

Delivery and discussion

Delivery, post-consultation and discussion

At the conclusion of our metaproteomics analysis, we ensure a seamless transition from discovery to application. We deliver detailed reports and data, followed by a post-delivery consultation to discuss your study's insights and findings.


What to expect during post-consultation:

  • Explanation of the different steps in the sample analysis
  • Discussion of the data
  • Explanation of the different steps in the data analysis
  • Q&A to the report(s)

Together, we ensure that you have the best prerequisite for your further research. The consultation can also be used to explore the next step, whether you are looking to expand the project with additional omics studies or validate the results.


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